Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs2155574 | chr11:96113441 | C/T | 7.18E-5 | 490 | 19.83 | 16.13 | 15.7 | KM Plot |
| THCA | rs2155575 | chr11:96112314 | G/A | 4.69E-6 | 488 | 15.87 | 15.9 | 17.73 | KM Plot |
| THCA | rs2163747 | chr5:147270295 | C/T | 1.76E-5 | 488 | 16.07 | 15.93 | 9.33 | KM Plot |
| THCA | rs2176998 | chr15:41420807 | A/G | 0.000274 | 470 | 15.02 | 16.07 | 17.07 | KM Plot |
| THCA | rs2180196 | chr14:24734645 | G/A | 3.46E-6 | 484 | 15.93 | 15.83 | 17.13 | KM Plot |
| THCA | rs2202752 | chr6:87162892 | A/G | 2.32E-14 | 477 | 15.07 | 16.72 | 25.67 | KM Plot |
| THCA | rs2211599 | chr10:90929547 | G/A | 0.000311 | 482 | 15.33 | 17.85 | 14.47 | KM Plot |
| THCA | rs2228626 | chr11:62575025 | A/T | 7.62E-5 | 489 | 16.2 | 14.33 | 14.27 | KM Plot |
| THCA | rs2228627 | chr11:62592961 | T/C | 0.000117 | 482 | 15.97 | 14.72 | 14.27 | KM Plot |
| THCA | rs2235525 | chr1:22454325 | G/A | 4.68E-7 | 481 | 15.48 | 18.2 | 6.87 | KM Plot |
| THCA | rs2235526 | chr1:22454001 | T/C | 4.68E-7 | 481 | 15.48 | 18.2 | 6.87 | KM Plot |
| THCA | rs2235527 | chr1:22453975 | C/G | 4.68E-7 | 481 | 15.48 | 18.2 | 6.87 | KM Plot |
| THCA | rs2236011 | chr6:153297323 | T/C | 0 | 489 | 15.17 | 18.32 | 6.92 | KM Plot |
| THCA | rs2236052 | chr4:3318413 | C/T | 2.63E-5 | 490 | 16.87 | 15.83 | 12.23 | KM Plot |
| THCA | rs2237006 | chr4:3228492 | A/G | 1.28E-5 | 481 | 17.13 | 14.37 | 14.73 | KM Plot |